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Main » 2009 » September » 16
Trehalose 6,6 -Dimycolate and Lipid in the Pathogenesis of Caseating Granulomas of Tuberculosis in Mice

Robert L. Hunter, Margaret Olsen, Chinnaswamy Jagannath, and Jeffrey K. Actor

From the Department of Pathology and Laboratory Medicine, University of Texas–Houston Medical School, Houston, Texas

American Journal of Pathology, Vol. 168, No. 4, April 2006 Copyright © American Society for Investigative Pathology DOI: 10.2353/ajpath.2006.050848

Abstract

Trehalose 6,6 -dimycolate (TDM) is the most abundant, most granulomagenic, and most toxic lipid extractable from the surface of virulent Mycobacterium tuberculosis (MTB). We further examined its toxicity, which requires activation by oily surfaces. Injections of MTB and/or TDM i ... Read more »
Category: JOURNAL | Views: 8066 | Added by: anis | Date: 2009-09-16 | Comments (0)

Embryology
The House Mouse: Development and Normal

Stages from Fertilization to 4 Weeks of Age. By K. Theiler. Springer-Verlag, Heidelberg, 1972.
$39.40. 268 pp.

THE JOURNAL OF HISTOCHEMISTRY AND CYTOCHEMISTRY
Copyright © 1973 by The Histochemical Society, Inc.


This new book must be characterized by evidence ofsuperb dissections by the author and his associates, by as fine photographs of whole embryos and sections as are obtainable and by excellent reproductions and assemblage by the publishers. There are so few publications on the mouse development that this will be a “ must” in every laboratory where this embryo is used in research or in teaching. Having said this in all sincerity, one must turn to the weaknesses of the book.
The title portrays the animal as The House Mouse, ... Read more »
Category: JOURNAL | Views: 862 | Added by: anis | Date: 2009-09-16 | Comments (0)

Dietary supplements and functional foods: 2 sides of a coin?1–3

Charles H Halsted

Am J Clin Nutr 2003;77(suppl):1001S–7S. Printed in USA. © 2003 American Society for Clinical Nutrition


ABSTRACT

Dietary supplements are used by more than one-half of the adult US population. In contrast to pharmaceuticals, dietary supplements may be sold in the United States with little regulation other than listing of ingredients and the potential health benefits. By contrast, herbal products in Germany are carefully regulated by the same standards as drugs, and efforts are under way to standardize their regulation in the entire European Union. Most herbal users do not inform their physicians that they are taking these supplements, and most physicians do not inquire. Although some herbal products have clinically proven benefits, i ... Read more »
Category: JOURNAL | Views: 754 | Added by: anis | Date: 2009-09-16 | Comments (0)

Vibrio diabolicus sp. nov., a New Polysaccharide-Secreting Organism Isolated from a Deep-Sea Hydrothermal Vent Polychaete Annelid, Alvinella pompejana

GERARD RAGUENES,1* RICHARD CHRISTEN2, JEAN GUEZENNEC1,
PATRICIA PIGNET1, AND GEORGES BARBIER1

Institut Francais de Recherche pour l’ Exploitation de la Mer, Centre de Brest, 29 280 Plouzane´1, and Centre National de la Recherche Scientifique, Station Zoologique, 06 230 Villefranche sur Mer2,France

INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 0020-7713/97/$04.0010
Copyright © 1997, International Union of Microbiological Societies
Oct. 1997, p. 989–995

... Read more »
Views: 754 | Added by: anis | Date: 2009-09-16 | Comments (0)

The environment and autoimmune thyroid diseases

Mark F Prummel, Thea Strieder and Wilmar M Wiersinga

Department of Endocrinology and Metabolism, F5-171, Academic Medical Center, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands
(Correspondence should be addressed to M F Prummel; Email: m.f.prummel@amc.uva.nl)

European Journal of Endocrinology (2004) 150 605–618

Abstract

Genetic factors play an important role in the pathogenesis of autoimmune thyroid disease (AITD) and it has been calculated that 80% of the susceptibility to develop Graves’ disease is attributable to genes. The concordance rate for AITD among monozygotic twins is, however, well below 1 and environmental factors thus must play an important role. We have attempted to carry out a comprehensive review of all the envi ... Read more »
Category: JOURNAL | Views: 707 | Added by: anis | Date: 2009-09-16 | Comments (0)

Randomized Double-Blind Placebo-Controlled Trial of Bestatin in Patients With Resected Stage I Squamous-Cell Lung Carcinoma

Yukito Ichinose, Keiichiro Genka, Teruaki Koike, Harubumi Kato, Yoh Watanabe, Takashi Mori, Sogo Iioka, Akira Sakuma, Mitsuo Ohta

For the NK421 Lung Cancer Surgery Group
Journal of the National Cancer Institute, Vol. 95, No. 8, April 16, 2003

Background

Bestatin is a potent aminopeptidase inhibitor that has immunostimulant and antitumor activity. We conducted a prospective randomized, double-blind, placebocontrolled trial to determine whether postoperative adjuvant treatment with bestatin could prolong the survival of patients with completely resected stage I squamous-cell lung carcinoma. Methods: Patients with confirmed, resected stage I squamous-cell lu ... Read more »
Category: JOURNAL | Views: 695 | Added by: anis | Date: 2009-09-16 | Comments (0)

Therapy of Experimentally Induced Coliform Mastitis with a Propionibacterium
acnes Product'


J. S. HOGAN, K. L. SMITH, D. A. TODHUNTER, and P. S. SCHOENBERGER

Department of Dairy Science The Ohio State University Ohio Agricultural Research and Development Center Wooster 44691
1994 J Dairy Sci 77:46247

ABSTRACT

The efficacy of a Propionibacterium acnes product for treatment of coliform mastitis was evaluated following in- tramammary infusion of Escherichia coli. Ten cows were injected in- travenously with a product containing heat-killed P. acnes at 3 h, 3 d, and 7 d after bacterial challenge. Five cows served as untreated negative controls. Bacterial counts in milk, re ... Read more »
Category: JOURNAL | Views: 911 | Added by: anis | Date: 2009-09-16 | Comments (0)

CHARACTERIZATION AND IMMUNOBIOLOGIC ACTIVITIES OF LIPOPOLYSACCHARIDES
FROM PERIODONTAL BACTERIA

S. HAMADA1, T. KOGA, T. NISHIHARA, T. FUJIWARA2, AND N. OKAHASHI

Department of Dental Research, The National Institute of Health, Kamiosaki,
Shinagawa-ku, Tokyo, 141, Japan

Adv Dent Res 2(2):284-291, November, 1988

ABSTRACT

Bacterial surface structures play a critical role in the initiation of infectious diseases. Various surface components of pathogenic bacteria have been reported to be involved in host injury. There is a great deal of evidence incriminating certain Gram-negative, anaerobic bacteria present in the ... Read more »
Category: JOURNAL | Views: 782 | Added by: anis | Date: 2009-09-16 | Comments (0)

Yemlerine Vitamin A ve E İlave Edilen Alabalıklarda (Oncorhyncus mykiss) Seminal Plazmanın Biyokimyasal Bileşiminin Saptanması
 
Handan GÜNDÜZ(1); Ibrahim DOĞAN(2); Suat EKİNYüzüncü(3)
1. Yıl Üniversitesi, Van Sağlık Yüksekokulu, VAN.        
2. Uludağ Üniversitesi Veteriner Fakültesi, Dölerme ve Suni Tohumlama Anabilim Dalı, BURSA.
3. Yüzüncü Yıl Üniversitesi Veteriner Fakültesi, Biyokimya Anabilim Dalı, VAN  

ÖZET

Ülkemizde alabalık üretimi son yıllarda oldukça gelişme göstermiştir. Bozöyük ilçesinde bir alabalık işletmesinde gerçekleştirilen bu çalışmada 1 kontrol ve 6 deneme grubu kullanıldı. Deneme gruplarını; yemlerine 50, 100 ve 150 mg/kg vitamin E katılan 3 grup ile  50, 100, 150 mg/kg v ... Read more »
Category: JOURNAL | Views: 865 | Added by: anis | Date: 2009-09-16 | Comments (0)

Cytoprotective Effect of Podophyllum hexandrum Against Gamma Radiation Is Mediated via Hemopoietic System Stimulation and Up-Regulation of Heme-oxygenase-1 and the Prosurvival Multidomain Protein Bcl-2

Arora Rajesh, PhD, R. Sagar, MSc, S. Singh, MSc, R. Kumar, PhD, A. K. Sharma, MSc, J. Prasad, BSc, S. Singh, BSc, M. Gupta, PhD, R. K. Sharma, PhD, S. C. Puri, PhD, B. Krishna, MD, M. S. Siddiqui, PhD, S. S. Lahiri, PhD, R. P. Tripathi, MD, and G. N. Qazi, PhD

Abstrct

The radioprotective effect of a hydroalcoholic extracted material (REC-2000) from the rhizome of Podophyllum hexandrum was studied in mice exposed to lethal γγ radiation (10 Gy). The extract (REC-2000) was found to restore the hemoglobin content (14.73 ±± 0.33) and total leukocyte count (TLC) (4166.66 ±± 0.02) in lethally (10 Gy) γγ -irradiated mice on the ... Read more »
Category: JOURNAL | Views: 710 | Added by: anis | Date: 2009-09-16 | Comments (0)

Immunostimulants, Vaccines, and Environmental Stressors in Aquaculture: NBT Assays to show Neutrophil Activity by these
 
 Immunomodulators
Douglas P. Anderson  
Salmon Bay Biologics 2716 Elliott Ave. #900
Seattle, Washington 98121 USA 


Abstract 

While neutrophil activity assays have been used in human and veterinary medicine for diagnosis of blood neutrophil abnormalities, they are rarely used because of difficulties of handling nitro blue tetrazolium (NBT) solutions, drawing and preparation of blood samples and subjectivities in visual readings.  We have developed modifications for a simplified NBT assay that can be used in the diagnosis and tracing the effectiveness of immunostimulants, vaccines and environmental stressors of fish.  While training and practice for biologists and technicians is needed, the NBT assays can yield ... Read more »
Category: JOURNAL | Views: 2669 | Added by: anis | Date: 2009-09-16 | Comments (3)



Introduction
The term “blotting” refers to the transfer of biological samples from a gel to a membrane and their subsequent detection on the surface of the membrane. Western blotting (also called immunoblotting because an antibody is used to specifically detect its antigen) was introduced by Towbin, et al. in 1979 and is now a routine technique for protein analysis. The specificity of the antibody-antigen interaction enables a single protein to be identified in the midst of a complex protein mixture. Western blotting is commonly used to positively identify a specific protein in a complex mixture and to obtain qualitative and semiquantitative data about that protein.

The first step in a Western blotting procedure is to separate the macromolecules using gel electrophoresis. Following electrophoresis, the separated molecules are transferred or blotted onto ... Read more »
Views: 1571 | Added by: anis | Date: 2009-09-16 | Comments (8)



Protein Interactions
Introduction to Protein Interactions


Importance of Protein Interactions
The study of protein interactions has been vital to the understanding of how proteins function within the cell. Publication of the draft sequence of the human genome and proteomics-based protein profiling studies catalyzed a resurgence in protein interaction analysis. Characterizing the interactions of proteins in a given cellular proteome (now often referred to as the “interactome”) will be the next milestone along the road to understanding the biochemistry of the cell.

The ~ 30,000 genes of the human genome are speculated to give rise to 1 x 10(6) proteins through a series of post-translational modifications and gene-splicing mechanisms. Although a population of these proteins can be expected to work in relative isolation, the majority are ... Read more »
Views: 731 | Added by: anis | Date: 2009-09-16 | Comments (0)



Total Protein Assays

Introduction

Protein quantitation is often necessary prior to handling protein samples for isolation and characterization. It is a required step before submitting protein samples for chromatographic, electrophoretic and immunochemical separation or analyses.
The most common methods for the colorimetric detection and quantitation of total protein can be divided into two groups based upon the chemistry involved. Protein assay reagents involve either protein-dye binding chemistry (coomassie/ Bradford) or protein-copper chelation chemistry. Pierce offers seven colorimetric assays for detection and quantitation of total protein. They are all well-characterized, robust assays that provide consistent, reliable results. Collectively, they represent the state-of-the-art for colorimetric detection and quantitation ... Read more »
Views: 21505 | Added by: anis | Date: 2009-09-16 | Comments (60)



Introduction to Gas Chromatography

Silylation and Silylation Reagents
No one but Pierce offers the combination of variety, quality and reliability.

Derivatization The chemical literature contains an abundance of data on derivatization, most of which is relevant to particular compounds, classes of compounds and derivatization reagents. Two books are recognized as standards in the field of analytical derivatization. The first book, Handbook of Analytical Derivatization Reactions by Daniel R. Knapp (see page 36), provides a general collection of analytical derivatization methods for chromatography and mass spectroscopy (MS) that involves formation of covalent derivatives prior to analysis. The second book, Silylation of Organic Compounds by Alan F. Pierce2, “is a significant factor in the transfer of silylation reactions from the relatively e ... Read more »
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Blocking Unoccupied Sites

In an ELISA, it is important to block the unoccupied sites on the surface of the well to reduce the amount of nonspecific binding of proteins during subsequent steps in the assay. A variety of blocking buffers ranging from nonfat milk to highly purified proteins have been used to block unreacted sites. The blocking buffer should improve the sensitivity of the assay by reducing the background interference. An individual blocking buffer will not be compatible with every system; for this reason, a variety of blockers in both Tris buffered saline (TBS) and phosphate buffered saline (PBS) are available. The proper choice of blocker for a given assay depends on the antigen itself and on the type of enzyme conjugate to be used. For example, with applications using an alkaline phosphatase conjugate, a blocking buffer in TBS should be sele ... Read more »
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Chemical cross-linking reagents have become an invaluable tool in the scientific community. These reagents are used in preparing antibody-enzyme conjugates and other labeled protein reagents. After the protein is conjugated to an appropriate enzyme, it may then be used as a detection reagent in a variety of assays and applications. A number of cross-linking methods have been used to prepare enzyme conjugates. For example, an N-hydroxysuccinimide ester can be prepared from a ligand of interest, then reacted with a primary amine on the surface of the enzyme. While this method is necessary in some applications, such as those in which the ligand does not contain a primary amine, it is not useful as a general-purpose method.

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Views: 776 | Added by: anis | Date: 2009-09-16 | Comments (0)



Enzyme-linked immunosorbent assays (ELISAs) are designed for detecting and quantitating substances such as peptides, proteins, antibodies and hormones. Other names, such as enzyme immunoassay (EIA), are also used to describe the same process. In an ELISA, an antigen must be immobilized to a solid surface. The antigen is then complexed with an antibody that is linked to an enzyme. Detection is accomplished by incubating this enzyme-complex with a substrate that produces a detectable product. The most crucial element of the detection strategy is a highly specific antibody-antigen interaction.

Most commonly, ELISAs are performed in 96-well (or 384-well) polystyrene plates, which will passively bind antibodies and proteins. It is this binding and immobilization of reagents that makes ELISAs so easy to design and perform, as first described by Eva Engvall, et a ... Read more »
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The staining of protein bands on gels after electrophoresis is one of the most routinely performed protocols in the life science laboratory. Because significant time is invested in preparing reagents, staining and destaining, even the simplest staining protocols can be tedious and take hours to complete.

Pierce Gel Stains provide speed, simplicity, convenience and economy over both homemade and other commercially available staining products. Life scientists around the world now look to Pierce Stains for speed, ease-of-use, sensitivity, superior results and economy.

This brochure summarizes the key features and benefits of several Pierce Staining Products that represent clear improvements in staining technology. Easy-to-follow protocols with schematics demonstrate just how easy s ... Read more »
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Gel Electrophoresis of Proteins


Gel electrophoresis is a technique in which charged molecules, such as protein or DNA, are separated according to physical properties as they are forced through a gel by an electrical current. Proteins are commonly separated using polyacrylamide gel electrophoresis (PAGE) to characterize individual proteins in a complex sample or to examine multiple proteins within a single sample. PAGE can be used as a preparative tool to obtain a pure protein sample, or as an analytical tool to provide information on the mass, charge, purity or presence of a protein. Several forms of PAGE exist and can provide different types of information about the protein(s). • Nondenaturing PAGE, also called native PAGE, separates proteins according to their mass:charge ratio • SDS-PAGE, the most widely used electrophoresis technique, separat ... Read more »
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Move Your Research Forward Faster with EZ-Link™ Biotinylation Reagents



Pierce EZ-Link ™ Biotinylation Reagents make it easy to label any molecule (antibodies, peptides or oligonucleotides) with biotin to create a number of assay formats. Avidin’s affinity for biotin is so strong (Ka = 10-15 M-1) that it can survive boiling, pH extremes and detergents. Chaotropic agents such as 8M Guanidine•HCl or 6M Urea are the only agents that can dissociate this non-covalent bond.

Pierce can help you choose the right biotinylation reagent for your experimental applications. Whether you are performing Enzyme-Linked Immunosorbent Assay (ELISA), Western Blotting, Immunohistochemistry, Cell Surface Modification, Affinity Separations, Northern or Southern Blotting, Fluorescent Activated Cell Sorting, or Immunoprecipitation, the Avidin-Biotin complex can be used. Y not mak ... Read more »
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EZ-Link ® Biotinylation Reagents


The highly specific interaction of avidin with biotin (vitamin H) can be a useful tool in designing nonradioactive purification and detection systems. The extraordinary affinity of avidin for biotin (Ka = 10)is the strongest known non-covalent interaction of a protein and ligand and allows biotin-containing molecules in a complex mixture to be discretely bound with avidin conjugates. Pierce offers an extensive line of biotinylation reagents, conjugates and affinity supports that exploit this unique interaction. Some applications in which the avidin-biotin interaction has been used include ELISA; immunohistochemical staining; Western, Northern and Southern blotting; immunoprecipitation; cell-surface labeling; affinity purification; and fluorescence-activated cell sorting (FACS).

Biotin, a 244 dalton vitamin found in t ... Read more »
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Overview



Antibodies, like other proteins, can be covalently modified in many ways to suit the purpose of a particular assay. Many immunological methods involve the use of labeled antibodies, and a variety of reagents have been created to allow labeling of antibodies. Enzymes, biotin, fluorophores and radioactive isotopes are all commonly used to provide a detection signal in biological assays. Covalently attaching such a label to an antibody combines the unique specificity of the antibody with a sensitive means for detection, thus creating an ideal probe molecule. Aside from antibodies, these same labels can be attached to avidin, streptavidin, Fc-binding proteins such as Protein A or G, and many other proteins.

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... Read more »
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Overview

Antibodies are proteins; therefore, methods of purification from biological samples (serum, ascites fluid or culture super-natant) are really specialized forms of general protein purification methods (see the Protein Purification section of the Pierce TechnicalHandbook and Catalog). Antibody purification can be rather crude (as in precipitation of a fraction containing immunoglobulins and other proteins), particular to immunoglobulins as a group or highly specific to only those antibodies in a sample that bind to a given antigen.

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Antibody



Antibodies are host proteins that are produced by the immune system in response to foreign molecules that enter the body. These foreign molecules are called antigens, and their molecular recognition by the immune system results in selective production of antibodies that are able to bind the specific antigen. Antibodies are made by B lymphocytes and circulate throughout the blood and lymph where they bind to their specific antigen, enabling it to be cleared from circulation.

This ability of animal immune systems to produce antibodies capable of binding specifically to antigens can be harnessed to manufacture probes for detection of molecules of interest in a variety of research and diagnostic applications. No other current technology allows researchers to design and manufacture such highly specific molecular recognition tools. In addition to th ... Read more »
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Protein Array Technology



The principles of microspot array technology were first described more than a decade ago. Ekins, et al (1) explained why microspot assays are more sensitive than any other ligand binding assay in the “ambient analyte theory.” Much of the initial work was done on microspot immunoassays. The first widespread successful biological application of these microspot assays in the form of microarrays was in the area of molecular biology. From the very beginning, the power of generating data on a whole genome basis with the DNA microarray or ‘chip’ was realized.
Now that the genetic structure and function of many species have been completed or are well on the way to completion, the next logical step is microarray-based proteome analysis. Proteome analysis is fundamentally different than genetic analysis in that there ... Read more »
Views: 870 | Added by: anis | Date: 2009-09-16 | Comments (0)

Advancing Justice Through DNA Technology

 EXECUTIVE SUMMARY
DNA technology is increasingly vital to ensuring accuracy and fairness in the criminal justice system.  DNA can be used to identify criminals with incredible accuracy when biological evidence exists, and DNA can be used to clear suspects and exonerate persons mistakenly accused or convicted of crimes.

The current federal and state DNA collection and analysis system needs improvement.  In many instances, public crime labs are overwhelmed by backlogs of unanalyzed DNA samples. In addition, these labs may be ill-equipped to handle the increasing influx of DNA samples and evidence.  The problems of backlogs and the lack of up-to-date technology result in significant delays in the administration of justice.  More research is needed to develop faster methods for analyzing DNA evidenc ... Read more »
Category: JOURNAL | Views: 873 | Added by: anis | Date: 2009-09-16 | Comments (0)

James R. Brown and Philippe Sanseau
DDT • Volume 10, Number 8 • April 2005

Small non-coding RNAs called microRNAs have been shown to play important roles in gene regulation across a broad range of metazoans from plants to humans. In this review, the nature and function of microRNAs will be discussed, with special emphasis on the computational tools and databases available to predict microRNAs and the genes they target.

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Category: JOURNAL | Views: 752 | Added by: anis | Date: 2009-09-16 | Comments (0)

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